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Standing With The Tel Aviv University Community

Message from the President of Tel Aviv University, Prof. Ariel Porat –

Dear Tel Aviv University Community, These are difficult times for all of us, Jews and Arabs alike. The riots in Israel – in Jerusalem, Lod, Acco, and numerous other locations – are terrifying, alongside the incidents of warfare, and indicative of an unprecedented crisis in relations between Jews and Arabs in the State of Israel, while the outcome remains to be seen. Tel Aviv University has always been proud of being pluralist and liberal. There is no more important foundation to the liberal character of the University than the tolerance to which we are all committed, towards every individual, regardless of religion, nationality, ethnic affiliation, or opinion. This pluralism is not merely passive, but active: The University will act in every way possible in order that all members of the campus community will feel safe, and will enjoy the freedom to express their opinions without fear or concern. A society, not infrequently, is tested in times of crisis. Let us, the University community, offer an example to Israeli society of fitting ways to discuss, and to dissent, one from the opinion of another, in an atmosphere of tolerance and camaraderie, pleasantly and in the ways of peace. Please, take care of yourselves, your friends and your associates.   Sincerely yours, Prof. Ariel Porat President, Tel Aviv University

Our Planet in the Hands of Academia

TAU to launch a multidisciplinary research center on climate change with the aim of finding practical solutions to the global crisis.

Tel Aviv University will soon launch the multidisciplinary Center for Climate Change Action, with the aim of finding practical solutions to the global crisis. The new center, the first of its kind in Israel, will operate in the framework of the Porter School of the Environment and Earth Sciences, and will cover the subject from all angles, utilizing the knowledge, resources and capabilities of all faculties on campus (engineering, medicine, the exact sciences, life sciences and earth sciences, law, the social sciences, humanities, and the arts). The center will collaborate with representatives from industry, academia and government, in Israel and around the world, in an effort to develop technological solutions, raise public awareness, promote legislation and regulations, and more. Furthermore, the center will support the development of new and existing projects, award scholarships to students, develop a fellowship program, fund mentorships and advanced training programs, and launch an accelerator in collaboration with industry representatives. In addition, the center will publish annual position papers and organize international conferences.

“The time has come to find solutions”

Prof. Ariel Porat, President of Tel Aviv University: “Tel Aviv University is a partner in the need for all humankind to deal with the dangers of global warming and climate change. Confronting this challenge requires a view from many perspectives: technological, social, moral, economic, sociological, legal and more. The huge variety of disciplines at Tel Aviv University allows for such a broad view. This new multidisciplinary center that will deal with climate change joins the several multidisciplinary centers we have established in the last two years at the university, including the Center for Artificial Intelligence and Data Science, the Center for Combating Pandemics, and the Center for Quantum Science and Technology.” The center will be headed by Prof. Colin Price, Head of the university’s Department of Environmental Studies, who explains that “Basic research is important, but since we already know that there is a problem with global warming, and we know what causes the problem, the time has come to find solutions, from every perspective and every discipline. There are technological solutions that will come from engineering and the exact sciences, but there are also solutions that will come from regulation, public policy, and even psychology. After all, you don’t need modern technology to mobilize public support for action, and without this support, technological solutions will not be implemented. The Center for Climate Change Action will be a cross-campus collaboration, with partners in high-tech, industry, government and civil society.” According to Prof. Price, the main goal of the research center, and of humanity in general, is to first and foremost address the source of the problem, namely the greenhouse gases that humans emit into the atmosphere, and to meet the target of net zero greenhouse gas emissions by 2050, as defined by the UN. “We have a total of 30 years to find solutions and reach a global balance, and there are still a lot of problems to solve,” adds Prof. Price. ”A good example of this is solar energy. It’s cheaper to generate electricity from solar energy today  than from a power plant that uses fuel, coal or even natural gas, but the solar energy must be transported to people’s homes, the electricity generated must be stored at night, that is, in batteries, and you need infrastructure to carry the energy to population centers. We need to invest in finding practical solutions today, in order to avoid the gloomy forecasts of tomorrow.” Prof. Colin Price: “We have a total of 30 years to find solutions and reach a global balance, and there are still a lot of problems to solve.”

Fireflies’ Protective ‘Musical Armor’ Against Bats

Trailblazing TAU study reveals that fireflies produce strong ultrasonic sounds that may potentially work to deter bats.

They sure know how to put on a show at nights – fireflies are striking with their glow-in-the-dark feature. But have you ever stopped and wondered how these glowing insects defend themselves against predators? A trailblazing TAU study reveals that fireflies produce strong ultrasonic sounds that may potentially work to deter bats, serving as a ‘musical armor’ against these predators. The discovery of such a ‘musical battle’ between fireflies and bats may pave the way for further research, and the discovery of a new defense mechanism developed by animals against their predators. According to the study, the fireflies produce strong ultrasonic sounds soundwaves that the human ear, and more importantly the fireflies themselves, cannot detect. The researchers hypothesize that these sounds are, in fact, meant for the ears of the bats, keeping them away from the poisonous fireflies, and thereby serving as a kind of ‘musical armor’. The study was led by Prof. Yossi Yovel, Head of the Sagol School of Neuroscience, and a member of the School of Mechanical Engineering and the School of Zoology at the George S. Wise Faculty of Life Sciences. It was conducted in collaboration with the Vietnam Academy of Science and Technology (VAST) and has been published in iScience. Fireflies are known for their unique, all-year glow, which is effective as a mating signal. Their bodies contain poison, and so the light flashes probably also serve as an aposematic signal, a warning to potential predators. At the same time, this signal is also the firefly’s weakness, as it makes it an easy target for predators. Bats are among the fireflies’ most prevalent potential predators, and some bats have poor vision, rendering the flashing signal ineffective. This prompted the researchers to check whether fireflies were equipped with an additional layer of protection against bats.

Accidental Discovery of ‘Musical Battle’

The idea for this study came up accidentally, during a study that tracked bats’ echolocation. Ksenia Krivoruchku, the PhD student who led the study recalls, “We were wandering around a tropical forest with microphones capable of recording bats’ high frequencies, when suddenly, we detected unfamiliar sounds at similar frequencies, coming from fireflies. “In-depth research, using high-speed video, revealed that the fireflies produce the sound by moving their wings, and that the fireflies themselves are incapable of hearing this frequency. Consequently, we hypothesized that the sound is not intended for internal communication within the species.” Following this discovery, the team at Prof. Yovel’s laboratory examined three different species of fireflies that are common in Vietnam (Curtos, Luciola and Sclerotia), in addition to one Israeli species (Lampyroidea). It was found that they all produce these unique ultrasonic sounds, and that they are all unable hear them. Prof. Yovel says that it is premature to conclude that fireflies have developed a special defense mechanism specifically targeting bats, there are indications that this may be the case. The fact that the fireflies themselves are unable to hear the sound, while bats can both hear it and use it to detect the fireflies, makes it more likely that these ultrasonic sounds serve as a warning signal. The discovery of ultrasonic sounds in fireflies is in itself an important contribution to the study of predator-prey relations. The idea of warning signals that the sender itself cannot detect is known from the world of plants, but is quite rare among animals. Krivoruochku says “Our discovery of the ‘musical battle’ between fireflies and bats may pave the way for further research, and possibly the discovery of a new defense mechanism developed by animals against potential predators.”

Show Me Your Playlist And I’ll Tell You Who You Are

Could you be inadvertently channeling your inner Beyonce or Eminem?

A new study shows that three songs from a playlist are enough to identify the person who chose the songs. Hence, companies like YouTube and Spotify can accumulate a great deal of information about their users based only on their musical preferences. The study was led by Dr. Ori Leshman of The Jaime and Joan Constantiner School of Education at Tel Aviv University and Dr. Ron Hirschprung of the Department of Management and Industrial Engineering at Ariel University. The study was published in the journal Telematics and Informatics. The study included about 150 young people (all undergraduate students), in 4 groups of about 35 people each. Participants were asked to identify group members based on only three songs from their favorite playlist. The variety of the students’ musical preferences was wide and very diverse, including, for example, both old and new Israeli music (from Sasha Argov to Kaveret, Zohar Argov, Omer Adam and Hanan Ben Ari), classic rock and pop (from the Beatles and Pink Floyd to Beyonce and Ariana Grande), Israeli and international hip hop (from Kendrick Lamar and Eminem to Hadag Nahash and Tuna) and more. The song choices were then analyzed according to a mathematical model developed by the scholars. The findings surprised even the researchers. The analysis of the data showed that the group members were able to identify the study participants according to their musical taste at a very high level of between 80-100%, even though the group members did not know each other well and had no prior knowledge of each other’s musical preferences. Dr. Leshman and Dr. Hirschprung explain: “Music can become a form of characterization, and even an identifier. It provides commercial companies like Google and Spotify with additional and more in-depth information about us as users of these platforms. In the digital world we live in today, these findings have far-reaching implications on privacy violations, especially since information about people can be inferred from a completely unexpected source, which is therefore lacking in protection against such violations. Visiting YouTube is perceived by the ordinary person as an innocuous act, but this study shows that it can reveal a lot about that person. On the other hand, this knowledge can be used as a bridge between people and perhaps in the future lead to the creation of new diagnostic methods and fascinating intervention programs that will make use of people’s favorite music.”

Promoting Equality on Campus

Tel Aviv University has announced the formation of a new unit – the Equality and Diversity Commission – to be led by Prof. Neta Ziv from The Buchmann Faculty of Law. The new Commission, which will report directly to the University President, will deal with all aspects of equality and diversity on campus, including gender, Arabs, first-generation university students, people with disabilities, the LGBT community, members of the Ethiopian community, and the ultra-Orthodox. The Commission will act to promote equality and diversity in the faculty, the administration, and the student body. Prof. Ziv will start her new role in July 2021.

Striving for a Diverse & Equal Campus

Tel Aviv University has thus adopted in practice the recommendations of the Diversity Committee appointed by Prof. Ariel Porat, President of TAU, to examine the issue. The Committee, headed by Prof. Sigal Alon, recommended, inter alia, that the new unit outline a comprehensive university policy, set goals, and help senior TAU office holders promote equality and diversity in the areas under their responsibility. The Committee report states: “To solve complex social problems, discover the next scientific breakthrough, and reach new heights of artistic expression, we must allow diverse ideas, approaches, perspectives, and experiences. Such diversity stimulates new research POVs, analytical methods, discoveries, and solutions.” Similarly, campus diversity creates opportunities for interactions among students and faculty members coming from different backgrounds and expands tolerance towards a broad range of perspectives. A diverse campus is itself an edifying model as it prepares students for better citizenship and leadership in a democracy striving for an ideal society free of racism, fear of the other, and stereotyping. TAU President Prof. Ariel Porat: “To strive for equality and diversity on the campus is not only a social objective of the highest importance. A diverse academic faculty ensures a higher academic level for the university and its units; a diverse student body makes the experience of studying at the campus more meaningful; and a diverse administration provides the campus community with the sense that the university belongs to everyone regardless of gender, ethnicity, or nationality. I’m proud that Prof. Neta Ziv responded favorably to my request to assume the position of establishing the new Commission. Anyone who knows Neta knows that she is both a fully ethical individual and someone who gets things done, a rare combination of traits. For many years, she headed the Law Faculty’s legal clinics and made them a source of pride for the Faculty and University as a whole, nationally and internationally.” Prof. Neta Ziv notes that the Commission she will lead will operate jointly with existing units to expand programs that have been implemented in recent years, particularly for first-generation university students and students with disabilities, the integration of Arabs and other groups in the administrative staff, and increasing the number of women and Arabs on the academic faculty at all levels. Prof. Ziv: “I’m greatly honored to have been asked to head the formation of the new unit and work on issues I have studied, taught, and been active in for more than thirty years. I believe that a diverse, equal campus is critical for achieving the academic excellence we strive for. But this is also an ethical matter. As a body that relies on public and community resources, the University is obligated to reflect the diversity of the Israeli public at large and become a sphere where every group enjoys a sense of belonging in an equal and respectful manner.”  

Google and TAU to Harness the Power of AI for Social Good

Google and Tel Aviv University recently launched a three-year program for promoting AI-related multidisciplinary research for the benefit of society. The program aims to support research and collaborations in Data Science and Artificial Intelligence, that can advance humanity by addressing focal social issues on the global agenda. It was launched within the framework of TAD, the TAU Center for Artificial Intelligence and Data Science, established in February and headed by Prof. Meir Feder of The Iby and Aladar Fleischman Faculty of Engineering. The program was launched at a recent ceremony at TAU, announcing 10 winners – out of 27 proposals submitted in response to TAU and Google’s joint call. Seven of the winning projects are supported by Google. The grant winners, whose projects address different aspects of AI for Social Good, include researchers from a wide range of disciplines: Zoology (Faculty of Life Sciences), Electrical Engineering, Economics, Statistics, Communication Disorders, Biblical Studies, Earth Sciences and Computer Science, Sociology and Anthropology and more.

Bridging Disciplines to Make Good Things Happen

TAU President Prof. Ariel Porat, who aims to establish ‘bridges’ between the different disciplines studied at TAU, said at the ceremony: “I share a common vision with Prof. Yossi Matias. We believe that AI researchers can benefit significantly from collaborations with researchers in the social sciences and humanities, just as the latter benefit from new developments in AI. I am very happy about our partnership with Google. I look forward to seeing its fruits and hope to expand it further in the future.” Prof. Yossi Matias, VP at Google and Managing Director of Google Center in Israel, spoke of AI technologies and how they are already improving our lives dramatically: “AI already has great impact in various areas. We are delighted for this opportunity to harness the power of AI for social good and for science. Google is especially happy about its work on beneficial and even lifesaving products, such as the worldwide project for accurate flood forecasting, a technology enabling the hearing-impaired to conduct phone conversations, and studies on the use of AI to enhance disease diagnosis.” Prof. Matias thanked Prof. Porat, Prof. Meir Feder, Head of the TAD Center, and all other partners in the initiative. He spoke of the special opportunity to generate collaborations between researchers, and noted that he is a great believer in connections between different disciplines. “There are some deep and fascinating research questions associated with AI in many different disciplines, creating substantial opportunities for collaboration. Good things happen when different ideas and different approaches come together.”   Left to right: Prof. Yossi Matias, Prof. Ariel Porat, Prof. Meir Feder & Prof. Tova Milo The joint venture will include a joint seminar on Machine Learning (ML), led by TAD Director Dr. Shimon (Moni) Shahar and Dr. Deborah Cohen, a scientist at the new Google Center in Israel. Prof. Meir Feder emphasized that “the AI revolution is expected to impact every aspect of our lives, from drug development and data-based personalized medicine, to defense systems, financial systems, scientific discoveries, robotics, autonomous systems and social issues. In addition, it is very important to train human capital in this area, and therefore the Center will provide every student at TAU with a basic AI education. TAU is special in having researchers who specialize in basic science and AI, as well as researchers who apply AI in the humanities and social sciences. We are happy that Google has decided to join forces with TAU in this important matter. The collaboration with Google will enable utilization of the power of AI and Data Science, channeling it toward the benefit of society.”

Are We Getting to the Root of Cancer?

Groundbreaking discovery that plant roots grow in a spiral motion inspires search for similar motion in cancer cells.

In an interdisciplinary research project carried out at Tel Aviv University, researchers from the School of Plant Sciences affiliated with The George S. Wise Faculty of Life Sciences collaborated with their colleagues from the Sackler Faculty of Medicine in order to study the course of plant root growth. Aided by a computational model constructed by cancer researchers studying cancer cells, adapted for use with plant root cells, they were able to demonstrate, for the first time in the world, and at the resolution of a single cell, that the root grows with a screwing motion – just like a drill penetrating a wall. In the wake of this study, the cancer researchers conjecture that cancer cells, too, are assisted by a spiral motion in order to penetrate healthy tissue in the environment of the tumor, or to create metastases in various organs of the body. The research was led by Prof. Eilon Shani from the School of Plant Sciences and Food Security and Prof. Ilan Tsarfaty from the Department of Clinical Microbiology and Immunology at Tel Aviv University, and was conducted in collaboration with researchers from the USA, Austria and China. The article was published in March 2021 in the acclaimed journal Nature Communications.

Significant Advance in Plant Research – and in the War on Cancer?

The researchers in Prof. Shani’s group, led by Dr. Yangjie Hu, used as a model the plant known as Arabidopsis. They marked the nuclei of the root cells with a fluorescent protein and observed the growing process and movement of the cells at the root tip through a powerful microscope – approximately 1000 cells in each movie. Furthermore, in order to examine what causes and controls the movement, they focused on a known hormone named auxin, which regulates growth in plants. They built a genetic system that enables activation of auxin production (like a switch) in a number of selected cells-types, and then monitored the influence of the on/off mechanism, in four dimensions – the three spatial dimensions and the dimension of time. After each instance of auxin biosynthesis, each of the thousand cells was video recorded for a period of 6 to 24 hours, thus an enormous amount of data accumulated.

WATCH: The process of growth and movement of cells at the root tip using a microscope

For the next stage, the researchers were aided by the computational tools provided by Prof. Tsarfaty, which had been developed in his laboratory for the purpose of monitoring the development of cancerous growths. They used these tools to analyze the imaging data obtained in the study. Thus they were actually able, for the first time, to observe with their own eyes the corkscrew movement of the root, as well as to precisely quantify and chart some 30 root growth parameters relating to time and space – including acceleration, length, changes in cell structure, coordination between cells during the growth process and velocity – for each one of the thousand cells at the root tip. Using fluorescent reporters, the findings even allowed them to precisely assess the movement and the influence of the auxin on the root, and the way in which it controls the growth process. Prof. Shani: “The computational tools that were developed for cancer research have enabled us, for the first time, to precisely measure and quantify the kinetics of growth and to reveal the mechanisms that control it at the resolution of a single cell. By this they have significantly advanced plant research, an area of utmost importance for society – both from an environmental point of view and in terms of agriculture and feeding the population.” Prof. Tsarfaty adds: “This was a synergetic collaboration that benefited and enlightened both parties. In plants, processes take place much more rapidly, and therefore constitute an excellent model for us. In consequence of the findings provided by this plant study, we are presently examining the possibility of a similar screw-like motion in cancer cells and in metastases, in the course of their penetration into adjacent healthy tissues.”

British Variant 45% More Contagious than Original Virus

According to TAU study, based on data from 300,000 tests for Covid-19.

A new study at Tel Aviv University found that the British variant (termed: B.1.1.7) of Covid-19 is 45% more contagious than the original virus. The researchers relied on data from about 300,000 PCR tests for Covid-19 obtained from the COVID-19 testing lab, which was established in collaboration with the Electra Group. According to the researchers, “The study proves that active monitoring of at-risk population and prioritized vaccination programs can prevent hundreds of deaths.” The new study was conducted by Prof. Ariel Munitz and Prof. Moti Gerlitz of the Department of Clinical Microbiology and Immunology at the Sackler Faculty of Medicine, together with Dr. Dan Yamin and PhD student Matan Yechezkel from the Laboratory for Epidemic Modeling and Analysis (LEMA) at the Department of Industrial Engineering, all at Tel Aviv University. The study’s results were published in the prominent scientific journal Cell Reports Medicine. The Electra-TAU laboratory was established in March 2020, right after the outbreak of the first wave of the pandemic in Israel. To date, it has analyzed hundreds of thousands of tests from all over the country – from public drive-in test facilities, as well as programs targeting specific populations – such as ‘Shield for Fathers and Mothers’ which routinely ran tests in at-risk hotspots like retirement homes. Prof. Ariel Munitz explains: “We use a kit that tests for three different viral genes. In the British variant, also known as B.1.1.7, one of these genes, the S gene, has been erased by the mutation. Consequently, we were able to track the spread of the variant even without genetic sequencing.” According to Prof. Munitz, the data from the lab shows that the spread of the British variant in Israel was very rapid: On December 24, 2020 only 5% of the positive results were attributed to the British variant. Just six weeks later, in January 2021, this variant was responsible for 90% of Covid-19 cases in Israel. The current figure is about 99.5%. “To explain this dramatic increase, we compared the R number of the SARS-CoV-2 virus with the R of the British variant. In other words, we posed the question: How many people, on the average, contract the disease from every person who has either variant? We found that the British variant is 45% – almost 1.5 times – more contagious.”

Vaccine Saved Hundreds

In the second stage of the study, the researchers segmented contagion by age groups. The results indicated that the turning point for the 60+ population compared to other age groups occurred two weeks after 50% of Israel’s 60+ population received their first vaccine shot: “Until January we saw a linear dependence of almost 100% between the different age groups in new cases per 1,000 people,” says Dr. Dan Yamin. “Two weeks after 50% of the 60+ population received the first dose of the vaccine this graph broke sharply and significantly. During January a dramatic drop was observed in the number of new cases in the 60+ group, alongside a continued rise in the rest of the population. Simply put, since more than 90% of those who died from Covid-19 were over 60, we can say that the vaccine saved hundreds of lives – even in the short run.”

Active Monitoring of At-Risk Populations

Moreover, the new study proves that active monitoring of at-risk populations works. “There is a threshold value for determining whether a specific test is positive or negative for the virus – with a lower value indicating a higher viral load,” says Prof. Munitz. “When we compared the threshold values of the different genes in 60+ residents of retirement homes with the values measured in 60+ persons in the general population, we saw significantly higher values in the retirement homes. This means that the viral load in retirement homes was lower compared to the rest of the population. Since the residents of retirement homes are tested routinely, while other people are usually tested only when they don’t feel well or have been in contact with someone who had tested positive for the virus, we conclude that constant monitoring of at-risk populations is a method that works. It is important to emphasize: the relatively low viral load was found in retirement homes despite the fact that the British variant had already begun to spread in all populations. Consequently, we show that monitoring retirement homes, together with vaccination that gives precedence to vulnerable populations, prevent illness and mortality.” Dr. Yemin concludes: “Due to crowded conditions, large households and age distribution in the Israeli population, the coronavirus had a more favorable environment for spreading in Israel compared to most Western countries. Our message to the world is that if with our problematic starting point a distinct decline was identified, other Western countries can certainly expect the curve to break – despite the high contagion of the British variant – with a dramatic drop in severe cases following the vaccination of 50% of the older population, alongside targeted testing at risk epicenters.” Featured image: Left to Right: Prof. Ariel Munitz, Dr. Dan Yamin and Prof. Moti Gerlitz

Optical Technology Generates Immediate Melanoma Diagnosis

Expected to revolutionize the field of skin cancer diagnosis.

Melanoma is a life-threatening cancer, but its immediate diagnosis can save lives. An innovative optical technology that can distinguish between different types of cancer has now been developed in the laboratory of Professor Abraham Katzir, from the Raymond and Beverly Sackler Faculty of Exact Sciences at Tel Aviv University, which enables real time diagnosis of melanoma. Based on special optical fibers, the technology will enable every dermatologist to determine the character of a suspicious lesion automatically, and particularly if it is melanoma. Non-invasive, immediate, and automatic, this process may lead to a dramatic change in the field of diagnosing and treating skin cancer, and possibly other types of cancer as well. The technology has been tried successfully on about one hundred patients in a major hospital in Israel. The findings were published in the Journal Medical Physics.

Seeing Skin Cancer’s True Colors

When a suspicious lesion is found on the skin, during a routine examination, it is removed in a minor surgical procedure and sent to a laboratory for testing. A pathologist diagnoses the lesion and determines whether it is melanoma. In most cases where melanoma is discovered early, when it is still superficial and less than one-millimeter-thick and it is removed, the patient recovers. Late diagnosis, when the melanoma is more than one-millimeter-thick, significantly reduces the chances of recovery and is life-threatening. “The idea that guided us in developing the technology was that in the visible range, there are various substances, having various colors, which are not characteristic of each substance. On the other hand, in the infrared region, various substances have different ‘colors’ of a sort, depending on the chemical makeup of each substance,” says Professor Katzir. “Therefore, we figured that with the help of devices that can identify these ’colors’, healthy skin and each of the benign and malignant lesions would have different ’colors’, which would enable us to identify melanoma.” Professor Katzir’s research group developed special optical fibers that are transparent in the infrared. The group, in collaboration with physicists Professor Yosef Raichlin of Ariel University, Dr. Max Platkov of the Negev Nuclear Research Center, and Svetlana Bassov of Professor Katzir’s group, developed a system, based on these fibers, in accordance with the requirements of evaluating skin. The researchers connected one end of this type of fiber to a device that measures the ’colors’ in the infrared, and touched the other end lightly, for several seconds, to a lesion on a patient’s skin. The fiber made it possible to check the ’color’ of the lesion right away. Clinical trials were then carried out on suspicious lesions in about one hundred patients. With the help of the new system, physicists performed measurements of the ’color’ of each lesion, before it was removed and sent to a pathology laboratory. The researchers showed that all of the lesions that were determined by pathologists as being of a certain type, such as melanoma, had a characteristic ’color’ in the infrared. Each type of lesion had a different ’color’. “The technology gives us a kind of ‘fingerprint’, which makes it possible to diagnose the various lesions by measuring their characteristic ’colors’”, says Professor Katzir. “In this way, lesions can be diagnosed using a non-invasive optical method, and the physician and the patient receive the results automatically and immediately.  This is unlike the test that is routinely used, which involves surgery, and the pathological diagnosis takes a long time.” Following the success of the study, the researchers plan to confirm the evaluation method on hundreds of patients.  

Non-invasive, immediate, and automatic

In conclusion, Professor Katzir says: “Melanoma is a life-threatening cancer, so it is very important to diagnose it early on, when it is still superficial. The innovative system will enable every dermatologist to determine the character of a suspicious lesion automatically, and particularly if it is melanoma. This system has the potential to cause a dramatic change in the field of diagnosing and treating skin cancer, and perhaps other types of cancer as well. The challenge will be to make this technology, which is still expensive, something that will be used in every hospital or clinic.”

Gut Healing

TAU researchers identify proteins that cause intestinal disease.

Researchers from Tel Aviv University have created an artificial intelligence platform that can identify the specific proteins that allow bacteria to infect the intestines – a method that paves the way for the creation of smart drugs that will neutralize the proteins and prevent disease, without the use of antibiotics. Participating in the study, which was published in the prestigious journal Science, were Ph.D. student Naama Wagner and Prof. Tal Pupko, Head of The Shmunis School of Biomedicine and Cancer Research at the Faculty of Life Sciences and the new Center for Artificial Intelligence & Data Science at Tel Aviv University. The international partners in the study included researchers from Imperial College (led by Prof. Gad Frankel) and the Institute for Cancer Research in London, as well as from the Technical University and the National Center for Biotechnology in Madrid.

Swapping the Cannon for a Rifle

Intestinal diseases are caused by pathogenic bacteria that attach to our intestinal cells. Once attached, the bacteria use a kind of molecular syringe to inject intestinal cells with proteins called “effectors.” These effectors work together to take over healthy cells, like hackers that take over computer servers using a combination of lines of code. However, until now scientists have not known what protein combination it is that cracks the cell’s defense mechanisms. Now, the TAU researchers’ artificial intelligence platform has identified novel effectors in the bacteria, which have been experimentally tested and validated. Subsequently, laboratory experiments conducted in London successfully predicted the protein combinations that lead to the pathogenic bacteria taking over the intestines. “In this study, we focused on a bacterium that causes intestinal disease in mice, a relative of the E. coli bacteria that cause intestinal disease in humans, so as not to work directly with the human pathogen”, explains Ph.D. student Naama Wagner. “The artificial intelligence we created knows how to predict effectors in a variety of pathogenic bacteria, including bacteria that attack plants of economic importance. Our calculations were made possible by advanced machine-learning tools that use the genomic information of a large number of bacteria. Our partners in England proved experimentally that the learning was extremely accurate and that the effectors we identified are indeed the weapons used by the bacteria.” “Pathogenic bacteria are treated with antibiotics,” says Prof. Tal Pupko. “But antibiotics kill a large number of species of bacteria, in the hope that the pathogenic bacteria will also be destroyed. So antibiotics are not a rifle but a cannon. Moreover, the overuse of antibiotics leads to the development of antibiotic-resistant bacteria, a worldwide problem that is getting worse. Understanding the molecular foundation of the disease is a necessary step in the development of drugs that are smarter than antibiotics, which will not harm the bacterial population in the intestines at all. This time we discovered the effectors of gut bacteria that attack rodents, but this is just the beginning. We are already working on detecting effectors in other bacteria in an attempt to better understand how they carry out their mission in the target cells they are attacking.”

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